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MathSBML
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| Department: | Control and Dynamical Systems |
| Organization: | California Institute of Technology |
| Department: | Control and Dynamical Systems |
| Organization: | University of Hertfordshire |
| Department: | Science and Technology Research Center |
| Organization: | California Institute of Technology |
| Department: | Control and Dynamical Systems |
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4859
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2004-04-28
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MathSBML is a Mathematica package designed for manipulating Systems Biology Markup Language (SBML) models. It converts SBML models into Mathematica data structures and provides a platform for manipulating and evaluating these models. Once a model is read by MathSBML, it is fully compatible with standard Mathematica functions such as NDSolve (a differential-algebraic equations solver). MathSBML also provides an application programming interface for viewing, manipulating, running numerical simulations; exporting SBML models; and converting SBML models to other formats such as XPP, HTML, FORTRAN. By accessing the full breadth of Mathematica functionality, MathSBML is fully extensible to SBML models of any size or complexity.
MathSBML can be downloaded from Sourceforge. More information is available at Bioinformatics and the SBML homepage.
This is a duplicate of Infocenter item 4859.
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Bioinformatics, SBML, reactions, biology, signal transduction, chemical reaction, Systems Biology Markup Language, XML, biochemistry
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http://bioinformatics.oupjournals.org/cgi/content/abstract/bth271v1
http://www.sbml.org/mathsbml.html
http://www.sf.net/projects/sbml
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