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Java Web Simulation (Jws); a Web Based Database of Kinetic Models

J. L. Snoep
Organization: University of Stellenbosch
Department: Dept. of Biochemistry
B.G. Olivier
Organization: Vrije Universiteit
Department: Molecular Cell Physiology
Journal / Anthology

Molecular Biology Reports
Year: 2002
Volume: 29
Page range: 259-63

Software to make a database of kinetic models accessible via the internet has been developed and a core database has been set up at http://jjj.biochem.sun.ac.za/. This repository of models, available to everyone with internet access, opens a whole new way in which we can make our models public. Via the database, a user can change enzyme parameters and run time simulations or steady state analyses. The interface is user friendly and no additional software is necessary. The database currently contains 10 models, but since the generation of the program code to include new models has largely been automated the addition of new models is straightforward and people are invited to submit their models to be included in the database.

*Science > Biochemistry
*Wolfram Technology > Linking Technology > J/Link

Mathematica, Java, JLink, Metabolic Control Analysis